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RACE-PCR ( rapid
amplification of cDNA ends )
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RACE-PCR is an anchor PCR modification of
RT-PCR. The rationale is to amplify sequences between a single previously
characterized region in the mRNA (cDNA) and an anchor sequence that is
coupled to the 5 or the 3 end. A primer is designed from the known
internal sequence and the second primer is selected from the relevant
anchor sequence
Definition
from:
Human Molecular Genetics 2
Tom Strachan & Andrew P. Read, 1999
RAPD ( Randomly amplified
polymorphic DNA )
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A technique for amplifying anonymous stretches of DNA,
using PCR with arbitrary primers.
Definition
from:
http://www.igd.cornell.edu/MolecularMarkers/Glossary.pdf
Real Time PCR
(Originally described as “Kinetic PCR”
by
Higuchi et al. in 1993)
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Real-time PCR is so named because it detects and measures
the amplification of target nucleic acids as they are produced. Real-time
PCR requires the use of primers similar to those used in conventional PCR.
However, unlike conventional PCR, real-time PCR uses an oligonucleotide
probe labeled with fluorescent dyes or an alternative fluorescent
detection chemistry, and a thermocycler equipped with the ability to
measure fluorescence. ...
Quality
Assurance/Quality Control Guidance for Laboratories Performing PCR
Analyses on Environmental Samples
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Real-Time PCR, also called quantitative (real-time) PCR or
Real-Time Quantitative PCR (RTQ-PCR), is a method of simultaneous DNA
quantification and amplification. DNA is specifically amplified by
polymerase chain reaction. After each round of amplification, the DNA is
quantified. Common methods of quantification include the use of
fluorescent dyes that intercalate with double-strand DNA and modified DNA
oligonucleotides (called probes) that fluoresce when hybridized with a
complementary DNA. ...
Definition
from:
http://en.wikipedia.org/wiki/Real-Time_PCR
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A technique designed to detect and quantify sequence-specific PCR products
as they accumulate in 'real-time' during the PCR amplification process.
Definition
from:
http://www.nature.com/nrg/journal/v6/n2/glossary/nrg1525_glossary.html
Rep-PCR
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Is a type of polymerase chain
reaction that targets the repetitive sequences in bacterial genomes using
specific primers that are designed complementary to bacterial interspersed
repetitive sequences
Definition
from:
Lactobacillus Genotyping by Fluorophore - Enhanced Repetitive PCR (FERP)
and Capillary Electrophoresis
Ania Szary,2001
Restriction enzyme
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These are enzymes (endonucleases, more
specifically) which recognize a specific, short sequence of DNA and cut
the DNA at that point. Different restriction enzymes recognize and cut
different sequences. There are hundreds of different restriction enzymes
available commercially. Many restriction enzymes leave "sticky ends" when
they cut, which are available to bind with other "sticky ends" left by the
same enzymer. Restriction enzymes are a vital tool in genetics, since they
allow cutting (and pasting) of DNA
Definition
from:
http://www.acad.carleton.edu/curricular/BIOL/classes/bio125/recdna
/glossary.html
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A protein that recognizes specific, short
nucleotide sequences and cuts DNA at those sites. Bacteria contain over
400 such enzymes that recognize and cut more than 100 different DNA
sequences
Definition
from:
Genome Glossary
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An endonuclease that will recognise a
specific target sequence and cut the DNA chain at that point.
Definition
from:
http://www.igd.cornell.edu/MolecularMarkers/Glossary.pdf
Restriction site
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The specific nucleotide sequence of DNA at which a particular
restriction enzyme cuts the DNA.
Definition
from:
http://www.igd.cornell.edu/MolecularMarkers/Glossary.pdf
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A sequence of DNA that is recognized by an endonuclease (a
protein that cuts DNA) as a site at which the DNA is to be cut.
Definition
from:
Genetests
Reverse transcriptase
-RNA-dependent
DNA polymerase - An enzyme that uses an RNA
molecule as a template for the synthesis of a complementary DNA (cDNA)
strand
Definition
from:
http://www.qimr.edu.au/qimr_glossary.html
-
A
reverse transcriptase, also known as RNA-directed DNA
polymerase, is a DNA polymerase enzyme that transcribes single-stranded
RNA into double-stranded DNA. Normal transcription involves the synthesis
of RNA from DNA, hence reverse transcription is the reverse of this, as it
synthesises DNA from RNA
Definition
from:
Reverse transcriptase, Wikipedia, The Free Encyclopedia
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An enzyme used by retroviruses to form a complementary DNA
sequence (cDNA) from their RNA. The resulting DNA is then inserted into
the chromosome of the host cell.
Definition
from:
Genome Glossary
Reverse Transcription
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The copying of an RNA molecule back
into its DNA complement. The enzymes that perform this function are called
reverse transcriptases. Reverse transcription is is used naturally by
retroviruses to insert themselves into an organism's genome. Artifically-induced
reverse transcription is a useful technique for translating unstable mRNA
molecules into stable cDNA.
Definition
from:
Glossary of Biotechnology Terms
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The process of copying information found in RNA into DNA.
Definition
from:
http://www.biochem.northwestern.edu/holmgren/Glossary/Definitions/Def-R/reverse_transcription.html
RFLP ( Restriction fragment
length polymorphism )
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Variation in DNA fragment banding patterns of electrophoresed
restriction digests of DNA from different individuals of a species. Often
due to the presence of a restriction enzyme
cleavage site at one place in the genome in one individual and the
absence of that specific site in another individual.
Definition
from:
http://www.biochem.northwestern.edu/holmgren/Glossary/Definitions/Def-R/RFLP.html
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Variation between individuals in DNA fragment sizes cut by
specific restriction enzymes; polymorphic sequences that result in RFLPs
are used as markers on both physical maps and genetic linkage maps. RFLPs
usually are caused by mutation at a cutting site.
Definition
from:
Genome Glossary
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A genetic
polymorphism with respect to the observed length
of a restriction fragment. RFLPs can result from single nucleotide
polymorphisms as well as from insertions, deletions, or microsatellite
expansions
Definition
from:
Mouse Genome Informatics
RT-PCR (
Reverse
Transcriptase-Polymerase
Chain Reaction )
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A variation of the PCR technique in which cDNA is made from RNA via
reverse transcription. The cDNA is then amplified using standard PCR
protocols.
Definition
from:
http://www.biochem.northwestern.edu/holmgren/Glossary/Definitions/Def-R/RT-PCR.html
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A method of amplifying mRNA by first synthesizing cDNA with
reverse transcriptase, then amplifying the cDNA using PCR. A positive result is
evidence of a particular mRNA, and hence of gene expression, in a sample.
Definition
from:
Mouse Genome Informatics
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A two-step process. First, complementary DNA (cDNA) is made from an RNA
template, using a reverse transcriptase enzyme, and then some of it is
used in a PCR reaction to produce large quantities.
Definition
from:
http://www.qimr.edu.au/qimr_glossary.html#R
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